BMTRY 702: 

Methods III: Advanced ANOVA and Regression

Instructor:              Mulugeta Gebregziabher, PhD

                             Phone: 876-1112

                                    Email: gebregz@musc.edu

 Class Hours:              Tue and Thu 10:30-12:30, Room 301 [8/21-12/6 2012]

Office Hours:          Tue/Th 1-2 or by appointment

 Texts:                

JL: John Lawson (2010). Design & Analysis of Experiments with SAS, CRC Press

FLW: Fitzmaurice, Laird and Ware (2004). Applied Longitudinal analysis. Wiley Inc.

Syllabus

Topics Covered and Approximate Schedule

Days 1-4          Single Factor Experiments (JL-Ch 2)  - Lecture1-4                      

SamplesizePower    CRD-examplecode   GLM-examplecode

Homework 1     hw1_data1   ProcGLM

Days  5-11        Experiments with Two or More Factors (JL-Ch 3 and 4)      Lecture5-7     Lectures8- 11     BIBD      SASReading                                                        

 Randomized Complete Block Design (RCBD)  DetergentStudyRCBD   SAS examples from JL textbook

Analysis of Covariance (ANCOVA)   ANCOVAexample1  ANCOVAexample2  TestofHomogneityofVarianceinRCBD

General factorial designs  creatingFactorialDesign   factorialHormonex  FactorialRCBD  Unbalancedfactorial

Homework 2 Homework2_code

Days 12-16      Repeated Measures Design (JL-Ch 9 and FLW-Ch 3, ch-16)   Lecture13-14  RM1 RM2

                                    Random and Mixed effects models using Proc Mixed and GLM  example1  example2  example3

                                    Lecture15_supplement    Lecture16-17   MANOVAexample  

                                    SAS Demo 2 (Proc Mixed) vertical and horizontal SAS code  3ImportantGraphs  ExerciseandDiet  RM1 RM2_HR RM2_rat

Homework 3                            

 Oct 18                         Exam 1

 Days 17-21      Linear Mxed Models (LMM)  (FLW Ch 4, 7,8)    Lecture17-20     Lectures21-22                                                                         

                                   SAS Examples:   FEVdata    DBP_lecture17 DBPdata   LeadData  Lead_lecture19  TLC_lecture19  ExerciseandStrengthStudy

                                    Homework 4

Days 22-24      Generalized Linear Mixed Models (GLMM) (FLW ch10-12)  Lectures 23-24

                                    SAS Demo 3 (Proc GLMMIX)  epilepsy_lecture23  tlc_lecture23  tlc_data

Homework 5

Days 25-26                  Missing Data  (FLW ch14 )  Lecture25-26

                                    SAS Demo 4 (Proc MI and MIANALYZE)   MissingData

Days 27-28                 fMRI Classes   Day1_SK1  Day2_SK2  Day1_KV1  Day2_KV2
                                    ReadingPaper
Dec 6                        Exam 2